STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
eryBNAD binding site:D-amino acid oxidase; Identified by match to protein family HMM PF01266. (389 aa)    
Predicted Functional Partners:
CJA_1644
Putative glycerol kinase; Identified by match to protein family HMM PF00370.
 
 0.996
CJA_2599
Putative oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.
 
  
 0.672
srlR
Putative transcriptional regulator, DeoR family; Identified by match to protein family HMM PF00455.
 
  
 0.664
gpsA
NAD-dependent glycerol-3-phosphate dehydrogenase; Identified by match to protein family HMM PF01210; match to protein family HMM PF07479; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
   
 0.619
CJA_2422
tRNA and rRNA cytosine-C5-methylase; Identified by match to protein family HMM PF01189; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
   0.520
pyrB
Aspartate carbamoyltransferase; Identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
     
 0.508
CJA_3062
Xylulose kinase (xylulokinase); Identified by match to protein family HMM PF00370; match to protein family HMM PF02782.
 
  
 0.483
CJA_2423
Putative membrane protein.
       0.472
CJA_3224
Glycerophosphoryl diester phosphodiesterase family; Identified by match to protein family HMM PF03009.
  
 
 0.432
sucA
2-oxoglutarate dehydrogenase, E1 component; Identified by match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM TIGR00239.
  
  
 0.411
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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