STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cel9AEndo-1,4-beta glucanase, cel9A; Identified by match to protein family HMM PF00553; match to protein family HMM PF00759; match to protein family HMM PF00801; match to protein family HMM PF02013; match to protein family HMM PF02927. (962 aa)    
Predicted Functional Partners:
cel6A
Cellobiohydrolase, putative, cel6A; Identified by similarity to PRF:2109217A; match to protein family HMM PF00553; match to protein family HMM PF01341; match to protein family HMM PF02013; Belongs to the glycosyl hydrolase family 6.
 
  
 
0.957
cel3D
Putative 1,4-beta-D-glucan glucohydrolase cel3D; Identified by match to protein family HMM PF00657; match to protein family HMM PF00933; match to protein family HMM PF01915.
 
 0.863
cel3C
Glucan 1,4-beta-glucosidase, putative, cel3C; Identified by match to protein family HMM PF00933; match to protein family HMM PF01915.
  
  
 0.797
cel3B
Glucan 1,4-beta-glucosidase, putative, cel3B; Identified by match to protein family HMM PF00933; match to protein family HMM PF01915.
  
  
 0.787
pel3C
Pectate lyase, putative, pel3C; Identified by match to protein family HMM PF03211.
  
   0.787
cel3A
Glucan 1,4-beta-glucosidase cel3A; Identified by match to protein family HMM PF00933; match to protein family HMM PF01915.
  
  
 0.783
pel3A
Pectate lyase, putative, pel3A; Identified by match to protein family HMM PF03211.
  
   0.767
pel3B
Pectate lyase, putative, pel3B; Identified by match to protein family HMM PF03211.
  
   0.759
xyn10A
Endo-1,4-beta-xylanase, xyn10A; Identified by match to protein family HMM PF00331; match to protein family HMM PF00553; match to protein family HMM PF02013; Belongs to the glycosyl hydrolase 10 (cellulase F) family.
 
   
0.724
xyn10C
Endo-beta-1,4-xylanase, xyn10C; Identified by match to protein family HMM PF00331.
 
   
 0.712
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.