STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xyl31AAlpha-xylosidase, putative, xyl31A; Identified by match to protein family HMM PF01055; match to protein family HMM PF07691; Belongs to the glycosyl hydrolase 31 family. (988 aa)    
Predicted Functional Partners:
bgl35A
Beta-galactosidase, putative, bgl35A.
 
  
 0.978
afc95A
alpha-L-fucosidase, putative, afc95A.
 
   
 0.837
CJA_2709
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM TIGR01782; match to protein family HMM TIGR03304.
 
   
 0.763
xylA
Xylose isomerase; Identified by match to protein family HMM PF00259; Belongs to the xylose isomerase family.
     
 0.728
bgl2C
Beta-galactosidase, putative, bgl2C; Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.649
gly43I
beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43I; Identified by match to protein family HMM PF03991; match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
  
   
 0.649
gly43J
beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43J; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
  
   
 0.591
gly43H
beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43H; Identified by match to protein family HMM PF02012; match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
  
   
 0.589
ebg98
Endo-beta-galactosidase, putative, ebg98A; Identified by match to protein family HMM PF00553; match to protein family HMM PF03422.
  
     0.581
axe2B
Acetyl xylan esterase, putative, axe2B.
  
     0.558
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.