STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAXylose isomerase; Identified by match to protein family HMM PF00259; Belongs to the xylose isomerase family. (443 aa)    
Predicted Functional Partners:
CJA_3062
Xylulose kinase (xylulokinase); Identified by match to protein family HMM PF00370; match to protein family HMM PF02782.
 
 
 0.995
CJA_1272
Probable NAGC-like transcription regulator yajF; Similar to yajF Escherichia coli (strain O157:H7, substrain EDL933); identified by match to protein family HMM PF00480.
    
 0.918
CJA_2776
Short chain dehydrogenase/reductase; Identified by match to protein family HMM PF00106.
     
 0.901
tkt
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
     
 0.859
bgl2A
Beta-galactosidase, putative, bgl2A; Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family.
    
 0.809
bgl2B
Beta-galactosidase, putative, bgl2B; Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family.
    
 0.809
glk
Glucokinase; Identified by match to protein family HMM PF02685; match to protein family HMM TIGR00749; Belongs to the bacterial glucokinase family.
     
 0.809
bgl2C
Beta-galactosidase, putative, bgl2C; Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family.
    
 0.809
xyl31A
Alpha-xylosidase, putative, xyl31A; Identified by match to protein family HMM PF01055; match to protein family HMM PF07691; Belongs to the glycosyl hydrolase 31 family.
     
 0.728
xylE
MFS transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
 
   
 0.489
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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