STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
man5CEndo-1, 4-beta mannanase, man5C; Identified by similarity to GB:AAO31761.1; match to protein family HMM PF00150; match to protein family HMM PF02013; match to protein family HMM PF02839. (830 aa)    
Predicted Functional Partners:
man26B
Endo-1, 4-beta mannanase, man26B; Identified by match to protein family HMM PF02013; match to protein family HMM PF02156; Belongs to the glycosyl hydrolase 26 family.
 
  
 0.987
man26C
Endo-1, 4-beta mannanase, putative, man26C; Identified by match to protein family HMM PF02156; Belongs to the glycosyl hydrolase 26 family.
  
 0.961
man26A
Endo-1, 4-beta mannanase, man26A; Catalyzes the endo hydrolysis of beta-1,4-linked mannan and galactomannan, but displays little activity towards other polysaccharides located in the plant cell wall. Preferentially hydrolyzes the larger oligosaccharides and has greater activity against non-substituted polysaccharides. It displays tight specificity for mannose at both the -2 and the -1 subsites. Appears to act in synergy with alpha-galactosidase (AgaA) to elicit hydrolysis of galactomannan. Belongs to the glycosyl hydrolase 26 family.
  
 0.946
man5A
Endo- 1,4-beta-mannanase man5A; Catalyzes the endo hydrolysis of beta-1,4-linked mannan, galactomannan and glucomannan. It is able to hydrolyze mannosidic linkages that are flanked by mannose or glucose.
 
  
0.939
man5B
Endo-1, 4-beta mannanase, man5B; Identified by match to protein family HMM PF00150; match to protein family HMM PF00553; match to protein family HMM PF02013.
  
  
0.938
man5D
Putative 1,4-beta mannosidase man5D; Identified by similarity to GB:AAS19695.1.
  
  
 
0.929
man5E
Endo-beta-mannanase, putative, man5E; Identified by similarity to GB:CAB56856.1.
  
  
 
0.928
abf62A
alpha-L-arabinofuranosidase, abf62A; Xylanase C contributes to hydrolyse hemicellulose, the major component of plant cell-walls.
  
   
 0.876
CJA_1272
Probable NAGC-like transcription regulator yajF; Similar to yajF Escherichia coli (strain O157:H7, substrain EDL933); identified by match to protein family HMM PF00480.
    
  0.802
xyn11B
Endo-1,4-beta-xylanase, xyn11B; Identified by match to protein family HMM PF00457; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   
 0.720
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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