STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_1052PFAM: Integrase catalytic region; KEGG: cti:pRALTA_0592 transposase, IS21 family. (502 aa)    
Predicted Functional Partners:
Hoch_1051
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: tmz:Tmz1t_2089 IstB domain protein ATP- binding protein.
    0.947
Hoch_0944
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: tmz:Tmz1t_2089 IstB domain protein ATP- binding protein.
    0.777
Hoch_1064
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: tmz:Tmz1t_2089 IstB domain protein ATP- binding protein.
    0.777
Hoch_1071
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: tmz:Tmz1t_2089 IstB domain protein ATP- binding protein.
    0.777
Hoch_1096
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: tmz:Tmz1t_2089 IstB domain protein ATP- binding protein.
    0.777
Hoch_1129
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: tmz:Tmz1t_2089 IstB domain protein ATP- binding protein.
    0.777
Hoch_1140
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: tmz:Tmz1t_2089 IstB domain protein ATP- binding protein.
    0.777
Hoch_1588
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: tmz:Tmz1t_2089 IstB domain protein ATP- binding protein.
    0.777
Hoch_2873
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: tmz:Tmz1t_2089 IstB domain protein ATP- binding protein.
    0.777
Hoch_2910
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: tmz:Tmz1t_2089 IstB domain protein ATP- binding protein.
    0.777
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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