STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_1328GTPase subunit of restriction endonuclease-like protein; KEGG: scl:sce3248 hypothetical protein. (796 aa)    
Predicted Functional Partners:
Hoch_2863
PFAM: 5-methylcytosine restriction system component- like protein; KEGG: scl:sce8202 hypothetical protein.
 
 
 0.950
Hoch_1327
KEGG: scl:sce3249 hypothetical protein.
       0.752
Hoch_6267
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; LVIVD repeat protein; Redoxin domain protein; KEGG: scl:sce1098 hypothetical protein.
  
     0.628
Hoch_0869
PFAM: transposase IS4 family protein; KEGG: ank:AnaeK_4105 transposase IS4 family protein.
  
     0.602
Hoch_1203
Hypothetical protein; KEGG: scl:sce7682 bacteriophage phiC31 resistance gene.
  
     0.474
Hoch_1202
KEGG: pna:Pnap_4283 hypothetical protein.
 
   
 0.465
Hoch_1204
PFAM: PglZ domain protein; KEGG: pna:Pnap_4279 alkaline phosphatase domain- containing protein.
  
     0.437
Hoch_3296
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; WD40 repeat, subgroup; SMART: serine/threonine protein kinase; tyrosine protein kinase; WD-40 repeat protein; KEGG: scl:sce4551 protein kinase.
  
     0.426
Hoch_1435
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; WD40 repeat, subgroup; SMART: serine/threonine protein kinase; tyrosine protein kinase; WD-40 repeat protein; KEGG: scl:sce4552 protein kinase.
  
     0.423
Hoch_1936
PFAM: APHP domain protein; KEGG: scl:sce5370 fibronectin type III domain- containing protein.
  
     0.417
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.