STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_3260PFAM: von Willebrand factor type A; protein of unknown function DUF1355; SMART: von Willebrand factor type A; KEGG: scl:sce5902 hypothetical protein. (903 aa)    
Predicted Functional Partners:
Hoch_3261
SMART: von Willebrand factor type A; KEGG: scl:sce5903 hypothetical protein.
     0.965
Hoch_3262
SMART: von Willebrand factor type A; KEGG: scl:sce5904 hypothetical protein.
 
     0.943
Hoch_3264
Hypothetical protein; KEGG: scl:sce5906 putative exported glycine/glutamine-rich protein.
 
    0.866
Hoch_3263
PFAM: ATPase associated with various cellular activities AAA_3; magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; KEGG: scl:sce5905 methanol dehydrogenase regulator (MoxR)-like protein.
 
  
 0.845
Hoch_0164
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: scl:sce1684 hypothetical protein.
  
     0.706
Hoch_0032
PFAM: protein of unknown function DUF1552; KEGG: scl:sce1021 hypothetical protein.
  
     0.659
Hoch_5858
PFAM: PBS lyase HEAT domain protein repeat- containing protein; KEGG: scl:sce6075 hypothetical protein.
 
     0.653
Hoch_5220
KEGG: scl:sce4394 hypothetical protein.
  
     0.647
Hoch_5967
PFAM: Protein of unknown function DUF1592; Protein of unknown function DUF1595; KEGG: scl:sce4603 putative secreted protein.
  
     0.645
Hoch_0031
PFAM: Protein of unknown function DUF1592; Protein of unknown function DUF1588; Protein of unknown function DUF1587; Protein of unknown function DUF1595; KEGG: scl:sce1022 hypothetical protein.
  
     0.634
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.