STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_4435TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: scl:sce0331 hypothetical protein. (838 aa)    
Predicted Functional Partners:
Hoch_4437
PFAM: extracellular solute-binding protein family 5; KEGG: ank:AnaeK_3422 extracellular solute-binding protein family 5.
 
     0.703
Hoch_1864
PFAM: Peptidase M23; KEGG: mpt:Mpe_A2745 putative transmembrane protein.
  
   
 0.670
Hoch_4438
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: mxa:MXAN_5184 sensor histidine kinase.
       0.670
murC
UDP-N-acetylmuramate/alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
  
   
 0.667
Hoch_4436
PFAM: FG-GAP repeat protein; KEGG: acp:A2cp1_3485 FG-GAP repeat protein.
       0.661
Hoch_5928
TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: sat:SYN_00550 rod shape-determining protein; Belongs to the SEDS family.
  
   
 0.656
Hoch_5929
Penicillin-binding protein 2; KEGG: scl:sce2411 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
  
 
 
 0.635
Hoch_1957
TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: mxa:MXAN_5605 cell cycle protein FtsW; Belongs to the SEDS family.
  
   
 0.622
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
  
   
 0.614
murA
UDP-N-acetylglucosamine1- carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
   
 0.612
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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