STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_5371PFAM: Uncharacterised conserved protein UCP07580; KEGG: mxa:MXAN_2348 hypothetical protein. (311 aa)    
Predicted Functional Partners:
Hoch_6745
KEGG: dol:Dole_0862 hypothetical protein.
  
     0.700
Hoch_1248
PFAM: thioesterase superfamily protein; KEGG: pap:PSPA7_2283 hypothetical protein.
  
     0.635
Hoch_5370
KEGG: afw:Anae109_3731 hypothetical protein.
       0.634
Hoch_3230
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: pla:Plav_1547 MerR family transcriptional regulator.
  
     0.571
Hoch_0020
Saccharopine dehydrogenase (NAD(+), L-glutamate- forming); PFAM: Saccharopine dehydrogenase; KEGG: scl:sce3726 hypothetical protein.
  
     0.518
Hoch_6104
PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: scl:sce0600 putative hydroxylase.
  
     0.490
Hoch_6019
Transcriptional regulator, Fis family; PFAM: helix-turn-helix- domain containing protein AraC type; helix-turn-helix Fis-type; SMART: Helix-turn-helix, AraC domain; KEGG: pfl:PFL_0202 AraC family transcriptional regulator.
  
     0.484
Hoch_2997
PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; KEGG: pag:PLES_23901 putative molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
   
 0.478
Hoch_5368
KEGG: pen:PSEEN1140 hypothetical protein.
       0.469
Hoch_5369
PFAM: beta-lactamase; KEGG: pae:PA4347 hypothetical protein.
       0.469
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.