STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_5391PFAM: Extracellular ligand-binding receptor; KEGG: mes:Meso_3328 extracellular ligand-binding receptor. (417 aa)    
Predicted Functional Partners:
Hoch_5395
PFAM: inner-membrane translocator; KEGG: tmz:Tmz1t_0567 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.998
Hoch_5396
PFAM: inner-membrane translocator; KEGG: mes:Meso_3323 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
Hoch_5394
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcs:BCAN_A1827 ABC transporter related.
 
 
 0.997
Hoch_5393
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mes:Meso_3326 ABC transporter related.
 
 
 0.996
Hoch_5392
KEGG: oan:Oant_1116 hypothetical protein.
 
     0.940
Hoch_5397
Hypothetical protein; KEGG: secreted, membrane-associated protein.
       0.524
Hoch_3863
PFAM: Extracellular ligand-binding receptor; KEGG: ade:Adeh_4326 ABC branched chain amino acid transporter, periplasmic ligand binding protein.
  
     0.442
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.