STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_5743TIGRFAM: probable sodium symporter protein; PFAM: Na+/solute symporter; KEGG: dde:Dde_0630 sodium:solute symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (619 aa)    
Predicted Functional Partners:
Hoch_5742
TIGRFAM: probable solute symporter protein; KEGG: hch:HCH_05071 hypothetical protein.
 
    0.960
Hoch_5741
KEGG: hypothetical protein.
       0.634
Hoch_3889
TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: azo:azo2149 acetoacetyl-CoA synthetase.
  
  
 0.599
Hoch_5092
TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: scl:sce1995 acyl-CoA synthetase.
  
  
 0.599
acsA
acetate/CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.599
Hoch_6139
TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: mes:Meso_3431 acetyl-CoA synthetase.
  
  
 0.599
Hoch_6534
TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: azo:azo3052 benzoate-coa ligase.
  
  
 0.599
Hoch_3042
Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase-like protein; KEGG: bja:blr6789 acyl-CoA synthetase.
  
  
 0.584
Hoch_5740
KEGG: sdn:Sden_3125 hypothetical protein.
       0.475
Hoch_0238
PFAM: Na+/solute symporter; KEGG: bxe:Bxe_B1295 SSS family Na(+)/monocarboxylate symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.472
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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