STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoch_6519TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: scl:sce7651 cation efflux family protein. (328 aa)    
Predicted Functional Partners:
Hoch_6522
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: eba:ebA4131 short chain oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
   0.658
Hoch_6520
PFAM: Polynucleotide adenylyltransferase region; KEGG: rpi:Rpic_2862 poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.657
Hoch_6521
KEGG: afr:AFE_1817 sulfotransferase domain protein.
       0.645
Hoch_6526
PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_A2807 acyl-CoA synthetase (AMP- forming)/AMP-acid ligase II.
  
    0.569
Hoch_6523
Hypothetical protein.
       0.566
Hoch_6524
Coproporphyrinogen dehydrogenase; KEGG: gur:Gura_0208 putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB.
       0.566
Hoch_6525
KEGG: azo:azo3252 hypothetical protein.
       0.566
Hoch_6518
PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; KEGG: hch:HCH_06645 anaerobic dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.557
Hoch_3614
PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: hypothetical protein.
   
    0.555
Hoch_1742
KEGG: mxa:MXAN_3415 copper-translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; YHS domain protein; Haloacid dehalogenase domain protein hydrolase; SMART: TRASH domain protein.
 
  
 0.509
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.