STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAK45429.1Hypothetical protein; HD-GYP domain. (457 aa)    
Predicted Functional Partners:
Rtn-6
Hypothetical protein; EAL domain.
 
 
 0.893
Rtn-2
Hypothetical protein; EAL domain.
 
 
 0.887
Rtn
Hypothetical protein; EAL domain.
 
 
 0.814
Rtn-3
EAL domain protein.
 
  
 0.803
BAK44990.1
Hypothetical protein.
 
 
 0.802
BAK43955.1
Hypothetical protein.
 
  
 0.796
BAK43387.1
GGDEF domain-containing protein.
 
 
 0.795
BAK45811.1
Hypothetical protein.
 
 
 0.793
Rtn-5
Hypothetical protein; EAL domain.
 
 
 0.792
Rtn-4
Hypothetical protein; EAL domain.
 
  
 0.790
Your Current Organism:
Eggerthella sp. YY7918
NCBI taxonomy Id: 502558
Other names: E. sp. YY7918
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.