PAAG_02940 protein (Paracoccidioides lutzii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PAAG_02940

TIA1 cytotoxic granule-associated RNA binding protein. (533 aa)

Predicted Functional Partners:

PAAG_09045

0.638

PAAG_03136

0.596

PAAG_03120

0.531

PAAG_00244

0.531

PAAG_07920

0.461

PAAG_01292

0.453

PAAG_08076

0.442

PAAG_08833

0.441

PAAG_04040

0.430

PAAG_07452

0.421

Your Current Organism:

Paracoccidioides lutzii

NCBI taxonomy Id: 502779
Other names: P. lutzii Pb01, Paracoccidioides brasiliensis Pb01, Paracoccidioides lutzii Pb01

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PAAG_00244	PAAG_01292	C1GNZ9	C1GRZ7	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Eukaryotic peptide chain release factor GTP-binding subunit.	0.946
PAAG_00244	PAAG_02940	C1GNZ9	C1GWP5	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	TIA1 cytotoxic granule-associated RNA binding protein.	0.531
PAAG_00244	PAAG_03120	C1GNZ9	A0A0A2VL29	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	LsmAD domain-containing protein.	0.858
PAAG_00244	PAAG_03136	C1GNZ9	C1GYI2	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	RRM domain-containing protein.	0.817
PAAG_00244	PAAG_08833	C1GNZ9	C1HDJ2	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family.	0.834
PAAG_00244	PAAG_09045	C1GNZ9	C1HE52	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Eukaryotic translation initiation factor 4E-1; Belongs to the eukaryotic initiation factor 4E family.	0.970
PAAG_01292	PAAG_00244	C1GRZ7	C1GNZ9	Eukaryotic peptide chain release factor GTP-binding subunit.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.946
PAAG_01292	PAAG_02940	C1GRZ7	C1GWP5	Eukaryotic peptide chain release factor GTP-binding subunit.	TIA1 cytotoxic granule-associated RNA binding protein.	0.453
PAAG_01292	PAAG_09045	C1GRZ7	C1HE52	Eukaryotic peptide chain release factor GTP-binding subunit.	Eukaryotic translation initiation factor 4E-1; Belongs to the eukaryotic initiation factor 4E family.	0.471
PAAG_02940	PAAG_00244	C1GWP5	C1GNZ9	TIA1 cytotoxic granule-associated RNA binding protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.531
PAAG_02940	PAAG_01292	C1GWP5	C1GRZ7	TIA1 cytotoxic granule-associated RNA binding protein.	Eukaryotic peptide chain release factor GTP-binding subunit.	0.453
PAAG_02940	PAAG_03120	C1GWP5	A0A0A2VL29	TIA1 cytotoxic granule-associated RNA binding protein.	LsmAD domain-containing protein.	0.531
PAAG_02940	PAAG_03136	C1GWP5	C1GYI2	TIA1 cytotoxic granule-associated RNA binding protein.	RRM domain-containing protein.	0.596
PAAG_02940	PAAG_04040	C1GWP5	C1GZU6	TIA1 cytotoxic granule-associated RNA binding protein.	RNA binding domain-containing protein.	0.430
PAAG_02940	PAAG_07452	C1GWP5	C1H9L1	TIA1 cytotoxic granule-associated RNA binding protein.	Leucine Rich Repeat domain-containing protein.	0.421
PAAG_02940	PAAG_07920	C1GWP5	C1HAU1	TIA1 cytotoxic granule-associated RNA binding protein.	RRM domain-containing protein.	0.461
PAAG_02940	PAAG_08076	C1GWP5	C1HBD5	TIA1 cytotoxic granule-associated RNA binding protein.	Uncharacterized protein.	0.442
PAAG_02940	PAAG_08833	C1GWP5	C1HDJ2	TIA1 cytotoxic granule-associated RNA binding protein.	ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family.	0.441
PAAG_02940	PAAG_09045	C1GWP5	C1HE52	TIA1 cytotoxic granule-associated RNA binding protein.	Eukaryotic translation initiation factor 4E-1; Belongs to the eukaryotic initiation factor 4E family.	0.638
PAAG_03120	PAAG_00244	A0A0A2VL29	C1GNZ9	LsmAD domain-containing protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.858