STRINGSTRING
Slin_0009 protein (Spirosoma linguale) - STRING interaction network
"Slin_0009" - Aminopeptidase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0009Aminopeptidase (343 aa)    
Predicted Functional Partners:
Slin_0008
Hypothetical protein (263 aa)
              0.759
Slin_0010
Isochorismatase hydrolase (213 aa)
              0.576
Slin_1594
Hypothetical protein (222 aa)
   
          0.501
Slin_0011
Beta-lactamase (427 aa)
              0.472
Slin_4414
Hypothetical protein (102 aa)
   
          0.463
Slin_0007
Transposase IS4 family protein (251 aa)
              0.446
Slin_4460
Nucleoside recognition protein domain-containing protein (411 aa)
   
          0.418
Slin_1108
D-alanine--D-alanine ligase; Cell wall formation (551 aa)
   
          0.401
Slin_5097
Hypothetical protein (727 aa)
   
          0.400
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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