STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0017Hypothetical protein. (48 aa)    
Predicted Functional Partners:
Slin_0018
PFAM: DNA polymerase beta domain protein region; KEGG: rfe:RF_1280 nucleotidyltransferase/HEPN domain-containing protein.
       0.757
Slin_0019
PFAM: peptidase M16 domain protein; KEGG: slo:Shew_3581 peptidase M16 domain-containing protein.
       0.721
ispF
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).
       0.718
Slin_0016
Hypothetical protein.
       0.718
Slin_0014
PFAM: amidohydrolase 2; KEGG: scl:sce2294 putative secreted protein.
       0.652
Slin_0020
Hypothetical protein.
       0.512
Slin_0012
Acetyltransferase; KEGG: mxa:MXAN_2839 acetyltransferase.
       0.485
Slin_0013
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: smt:Smal_0339 mandelate racemase/muconate lactonizing protein.
       0.485
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.