STRINGSTRING
Slin_0022 protein (Spirosoma linguale) - STRING interaction network
"Slin_0022" - RagB/SusD domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0022RagB/SusD domain-containing protein (562 aa)    
Predicted Functional Partners:
Slin_0021
TonB-dependent receptor (976 aa)
 
          0.933
Slin_3421
RagB/SusD domain-containing protein (521 aa)
   
          0.775
Slin_3419
RagB/SusD domain-containing protein (521 aa)
   
          0.775
Slin_0735
Xylose isomerase (312 aa)
   
          0.772
Slin_3420
TonB-dependent receptor plug (1076 aa)
   
          0.764
Slin_3418
TonB-dependent receptor plug (1076 aa)
   
          0.764
Slin_1168
Hypothetical protein (481 aa)
   
          0.763
Slin_3037
Hypothetical protein (850 aa)
   
          0.759
Slin_3030
Hypothetical protein (506 aa)
   
          0.756
Slin_5062
TonB-dependent receptor plug (1037 aa)
   
          0.746
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (14%) [HD]