STRINGSTRING
Slin_0032 protein (Spirosoma linguale) - STRING interaction network
"Slin_0032" - Lytic transglycosylase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0032Lytic transglycosylase (413 aa)    
Predicted Functional Partners:
Slin_0033
Lytic transglycosylase (365 aa)
 
       
0.607
Slin_0543
DNA polymerase I (1024 aa)
     
 
  0.604
Slin_3220
Glycosyl transferase family protein (785 aa)
 
 
      0.573
Slin_4434
Outer membrane protein assembly complex, YaeT protein (865 aa)
 
      0.564
pdxJ
Pyridoxal phosphate biosynthetic protein PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5’-phosphate (PNP) and inorganic phosphate (245 aa)
 
          0.562
Slin_5920
Zinc metalloprotease (438 aa)
 
          0.558
Slin_5889
Phosphatase KdsC (170 aa)
 
   
  0.552
Slin_1730
OmpA/MotB domain-containing protein (322 aa)
   
   
  0.551
Slin_3124
Hypothetical protein (251 aa)
   
          0.519
Slin_0243
Hypothetical protein (287 aa)
 
          0.499
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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