STRINGSTRING
Slin_0058 protein (Spirosoma linguale) - STRING interaction network
"Slin_0058" - Glycoside hydrolase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0058Glycoside hydrolase (693 aa)    
Predicted Functional Partners:
Slin_2883
Alpha amylase (630 aa)
 
          0.811
Slin_1089
Major facilitator superfamily protein (509 aa)
 
          0.705
Slin_4041
RagB/SusD domain-containing protein (477 aa)
   
          0.649
Slin_6054
RagB/SusD domain-containing protein (499 aa)
   
          0.575
Slin_0361
Alpha amylase (958 aa)
 
          0.540
Slin_0364
Hypothetical protein (683 aa)
   
          0.539
Slin_5062
TonB-dependent receptor plug (1037 aa)
 
          0.530
Slin_0057
Hypothetical protein (341 aa)
              0.529
Slin_0056
Hypothetical protein (157 aa)
              0.529
Slin_5058
RagB/SusD domain-containing protein (493 aa)
 
          0.516
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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