STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0076PFAM: SMP-30/Gluconolaconase/LRE domain protein; Arylesterase; KEGG: kpn:KPN_03982 putative outer membrane protein; gluconolactonase. (307 aa)    
Predicted Functional Partners:
Slin_3203
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: ccs:CCNA_01282 gluconolactonase.
  
  
 
0.927
Slin_2519
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: xcv:XCV4353 gluconolactonase precursor.
  
  
 
0.925
Slin_3953
KEGG: mpt:Mpe_A1594 glucose dehydrogenase; PFAM: PQQ-dependent enzyme-like; Pyrrolo-quinoline quinone; cytochrome c class I; SMART: Pyrrolo-quinoline quinone beta-propeller repeat.
  
  
 0.919
Slin_2450
PFAM: PQQ-dependent enzyme-like; Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; KEGG: spe:Spro_4849 pyrrolo-quinoline quinone.
  
  
 0.918
Slin_1132
PFAM: PQQ-dependent enzyme-like; Pyrrolo-quinoline quinone; cytochrome c class I; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; KEGG: bam:Bamb_5932 quinate/shikimate dehydrogenase, putative.
 
  
 0.917
Slin_0411
PFAM: Carbohydrate kinase, FGGY-like; KEGG: sugar kinase; K00851 gluconokinase.
  
 
 0.904
Slin_1831
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: tgr:Tgr7_0904 short-chain dehydrogenase/reductase SDR.
   
 
  0.901
Slin_2303
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_B0443 glucose 1-dehydrogenase.
   
 
  0.901
Slin_2520
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_B0443 glucose 1-dehydrogenase.
   
 
  0.901
Slin_6210
Heme-binding protein; KEGG: scl:sce1810 putative phosphohydrolase; TIGRFAM: heme-binding protein; PFAM: PBS lyase HEAT domain protein repeat- containing protein; SMART: PBS lyase HEAT domain protein repeat- containing protein.
    
  0.901
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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