STRINGSTRING
Slin_0104 protein (Spirosoma linguale) - STRING interaction network
"Slin_0104" - LuxR family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0104LuxR family transcriptional regulator (207 aa)    
Predicted Functional Partners:
Slin_0105
anti-FecI sigma factor FecR (339 aa)
 
 
  0.974
Slin_2374
anti-FecI sigma factor FecR (351 aa)
 
 
  0.893
Slin_3389
anti-FecI sigma factor FecR (355 aa)
 
 
  0.891
Slin_1219
anti-FecI sigma factor FecR (333 aa)
 
 
  0.889
Slin_5656
anti-FecI sigma factor FecR (332 aa)
 
 
  0.888
Slin_2763
anti-FecI sigma factor FecR (381 aa)
 
 
  0.887
Slin_6285
anti-FecI sigma factor FecR (333 aa)
 
 
  0.886
Slin_4980
anti-FecI sigma factor FecR (342 aa)
 
 
  0.885
Slin_4781
anti-FecI sigma factor FecR (345 aa)
 
 
  0.882
Slin_0867
anti-FecI sigma factor FecR (372 aa)
 
 
  0.876
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (8%) [HD]