STRINGSTRING
Slin_0109 protein (Spirosoma linguale) - STRING interaction network
"Slin_0109" - Cupin in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0109Cupin (377 aa)    
Predicted Functional Partners:
Slin_0110
Aldo/keto reductase (325 aa)
              0.729
Slin_4601
Formaldehyde dehydrogenase (396 aa)
 
          0.671
Slin_0111
(2Fe-2S)-binding domain-containing protein (214 aa)
   
        0.519
Slin_0112
Molybdopterin dehydrogenase FAD-binding protein (337 aa)
              0.511
Slin_0113
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein (743 aa)
   
        0.505
Slin_4146
citrate/H+ symporter (431 aa)
   
          0.483
Slin_4306
Hypothetical protein (438 aa)
   
          0.436
Slin_1722
Hypothetical protein (381 aa)
   
          0.428
Slin_1535
3-oxoadipate enol-lactonase (373 aa)
              0.420
Slin_2978
Hypothetical protein (360 aa)
 
          0.416
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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