STRINGSTRING
Slin_0116 protein (Spirosoma linguale) - STRING interaction network
"Slin_0116" - TonB-dependent receptor plug in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0116TonB-dependent receptor plug (823 aa)    
Predicted Functional Partners:
Slin_3961
Hypothetical protein (520 aa)
   
          0.687
Slin_0963
RagB/SusD domain-containing protein (514 aa)
   
          0.684
Slin_0967
Hypothetical protein (353 aa)
   
          0.682
Slin_0955
TonB-dependent receptor plug (1079 aa)
   
          0.675
Slin_0956
RagB/SusD domain-containing protein (498 aa)
   
          0.674
Slin_3947
Hypothetical protein (514 aa)
   
          0.667
Slin_0962
TonB-dependent receptor plug (1060 aa)
   
          0.663
Slin_1274
TonB-dependent receptor plug (1066 aa)
   
          0.662
Slin_3946
TonB-dependent receptor plug (1043 aa)
   
          0.660
Slin_6611
TonB-dependent receptor plug (1137 aa)
   
          0.650
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (13%) [HD]