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Slin_0174 protein (Spirosoma linguale) - STRING interaction network
"Slin_0174" - FeS assembly protein SufD in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0174FeS assembly protein SufD (441 aa)    
Predicted Functional Partners:
Slin_0175
FeS assembly ATPase SufC (251 aa)
 
 
  0.999
Slin_3608
FeS assembly protein SufB (497 aa)
 
 
0.997
Slin_0166
Cysteine desulfurase (412 aa)
 
 
  0.967
Slin_0163
Fe-S metabolism associated SufE (147 aa)
 
 
  0.921
Slin_1756
Class V aminotransferase (438 aa)
 
 
  0.875
Slin_6132
Class V aminotransferase (422 aa)
 
 
  0.822
Slin_2438
Class V aminotransferase (398 aa)
 
 
  0.810
Slin_0162
FeS assembly SUF system protein (103 aa)
 
   
  0.779
Slin_2612
Class V aminotransferase (399 aa)
   
 
  0.758
Slin_1785
Class V aminotransferase (394 aa)
   
 
  0.758
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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