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Slin_0208 protein (Spirosoma linguale) - STRING interaction network
"Slin_0208" - Short-chain dehydrogenase/reductase SDR in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0208Short-chain dehydrogenase/reductase SDR (263 aa)    
Predicted Functional Partners:
Slin_0209
Peptidase U61 LD-carboxypeptidase A (303 aa)
              0.859
Slin_4070
Oxidoreductase domain-containing protein (734 aa)
   
 
  0.728
Slin_0210
K channel inward rectifier domain-containing protein (330 aa)
 
          0.683
Slin_0197
Short-chain dehydrogenase/reductase SDR (280 aa)
   
          0.673
Slin_6445
Short-chain dehydrogenase/reductase SDR (272 aa)
 
 
  0.610
Slin_5818
Short-chain dehydrogenase/reductase SDR (260 aa)
   
          0.608
Slin_6109
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein (718 aa)
   
 
  0.591
Slin_4424
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein (811 aa)
   
 
  0.591
Slin_5066
TonB-dependent receptor plug (1001 aa)
   
          0.582
Slin_1831
Short-chain dehydrogenase/reductase SDR (259 aa)
 
          0.537
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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