STRINGSTRING
rny protein (Spirosoma linguale) - STRING interaction network
"rny" - Metal dependent phosphohydrolase in Spirosoma linguale
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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Experiments
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[Homology]
Score
rnyMetal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay (536 aa)    
Predicted Functional Partners:
Slin_5965
PSP1 domain-containing protein (398 aa)
 
          0.763
Slin_1357
Competence/damage-inducible protein CinA (417 aa)
         
  0.713
Slin_6028
Phosphoesterase RecJ domain-containing protein (343 aa)
 
     
  0.656
pheT
phenylalanyl-tRNA synthetase subunit beta (814 aa)
              0.635
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel (209 aa)
 
   
  0.615
Slin_0285
Hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division (95 aa)
              0.611
Slin_0283
Hypothetical protein (221 aa)
              0.548
Slin_5855
Cell division protein FtsK (856 aa)
 
          0.514
rplE
50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs (184 aa)
 
   
  0.510
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5’-end of 16S ribosomal RNA (120 aa)
 
     
  0.506
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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