STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0294PFAM: PASTA domain containing protein; SMART: PASTA domain containing protein; KEGG: dol:Dole_2230 PASTA domain-containing protein. (258 aa)    
Predicted Functional Partners:
Slin_2973
FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: tgr:Tgr7_2548 FHA-domain containing protein.
   
 
 0.913
Slin_0295
Hypothetical protein.
       0.741
Slin_4754
KEGG: hypothetical protein.
 
  
 0.719
Slin_1279
Hypothetical protein.
   
 
 0.712
Slin_2971
Hypothetical protein.
   
 
 0.712
Slin_1528
KEGG: gsu:GSU1489 hypothetical protein.
  
     0.700
Slin_5634
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: dds:Ddes_0388 tol-pal system protein YbgF.
 
     0.670
Slin_2956
PFAM: permease YjgP/YjgQ family protein; KEGG: sat:SYN_00415 permease.
 
     0.643
Slin_0992
PFAM: surface antigen (D15); KEGG: hch:HCH_05243 outer membrane protein/protective antigen OMA87.
  
     0.627
Slin_0008
KEGG: bba:Bd1501 hypothetical protein.
  
     0.624
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.