STRINGSTRING
Slin_0294 protein (Spirosoma linguale) - STRING interaction network
"Slin_0294" - Protein PASTA domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0294Protein PASTA domain-containing protein (258 aa)    
Predicted Functional Partners:
Slin_0295
Hypothetical protein (621 aa)
              0.827
Slin_1281
Serine/threonine protein kinase (429 aa)
 
          0.631
lspA
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins (261 aa)
   
          0.623
Slin_0293
Riboflavin synthase subunit alpha (200 aa)
              0.621
Slin_1108
D-alanine--D-alanine ligase; Cell wall formation (551 aa)
          0.619
Slin_1306
Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (103 aa)
   
          0.617
Slin_0296
Rhodanese (97 aa)
              0.604
Slin_0992
Surface antigen (D15) (875 aa)
   
          0.597
rpmC
50S ribosomal protein L29 (64 aa)
   
          0.596
Slin_3080
Hypothetical protein (1564 aa)
   
          0.595
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (12%) [HD]