STRINGSTRING
Slin_0302 protein (Spirosoma linguale) - STRING interaction network
"Slin_0302" - Peptidoglycan-binding lysin domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0302Peptidoglycan-binding lysin domain-containing protein (155 aa)    
Predicted Functional Partners:
Slin_4792
Trehalose-phosphatase (738 aa)
     
        0.680
Slin_2466
Hypothetical protein (110 aa)
     
        0.653
Slin_0301
Hypothetical protein (448 aa)
              0.518
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...] (894 aa)
              0.515
Slin_0300
Hypothetical protein (263 aa)
              0.508
Slin_0303
Hypothetical protein (303 aa)
              0.503
Slin_2383
DNA protecting protein DprA (370 aa)
   
   
  0.462
Slin_5629
Ferritin Dps family protein (168 aa)
     
   
  0.455
Slin_4325
Ferritin Dps family protein (157 aa)
     
   
  0.455
Slin_0734
Ferritin Dps family protein (157 aa)
     
   
  0.455
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (14%) [HD]