STRINGSTRING
Slin_0306 protein (Spirosoma linguale) - STRING interaction network
"Slin_0306" - Peptidase M20 in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0306Peptidase M20 (360 aa)    
Predicted Functional Partners:
Slin_0407
Argininosuccinate synthase (400 aa)
 
  0.989
Slin_1153
Class III aminotransferase (377 aa)
 
 
  0.985
Slin_0192
Arginine deiminase (501 aa)
       
  0.901
Slin_1156
Aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain-containing protein (320 aa)
 
   
  0.882
argH
Argininosuccinate lyase (445 aa)
 
   
  0.881
argC
N-acetyl-gamma-glutamyl-phosphate reductase (327 aa)
 
 
  0.875
argB
Acetylglutamate kinase (260 aa)
 
   
  0.871
Slin_0026
Hypothetical protein (235 aa)
 
          0.860
Slin_4514
Aspartate kinase (818 aa)
 
   
  0.593
Slin_0305
Hypothetical protein (294 aa)
              0.580
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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