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Slin_0316 protein (Spirosoma linguale) - STRING interaction network
"Slin_0316" - ABC transporter in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0316ABC transporter (244 aa)    
Predicted Functional Partners:
Slin_0317
Binding-protein-dependent transporters inner membrane component (519 aa)
  0.999
Slin_0315
Hypothetical protein (93 aa)
              0.869
Slin_1762
ABC transporter (218 aa)
   
        0.681
Slin_6496
ABC transporter (208 aa)
   
          0.660
Slin_0314
X-Pro dipeptidyl-peptidase domain-containing protein (666 aa)
              0.617
Slin_2343
Molybdate ABC transporter inner membrane subunit (221 aa)
   
      0.584
Slin_2247
Hypothetical protein (700 aa)
       
      0.567
tsaD
Glycoprotease family metalloendopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction (332 aa)
 
        0.479
Slin_5744
Dimethylallyltranstransferase (323 aa)
   
          0.462
cysS
cysteinyl-tRNA synthetase (499 aa)
 
        0.450
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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