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Slin_0325 protein (Spirosoma linguale) - STRING interaction network
"Slin_0325" - Cell surface receptor IPT/TIG domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0325Cell surface receptor IPT/TIG domain-containing protein (597 aa)    
Predicted Functional Partners:
Slin_5986
phytanoyl-CoA dioxygenase (344 aa)
   
          0.683
Slin_1208
ECF subfamily RNA polymerase sigma-24 subunit (195 aa)
   
          0.573
Slin_4900
Glycosyl hydrolase (1060 aa)
   
          0.549
Slin_1570
Glycosyl hydrolase (1021 aa)
   
          0.534
Slin_1572
Glycoside hydrolase family protein (1078 aa)
   
          0.531
Slin_1563
Glycoside hydrolase family protein (1082 aa)
   
          0.529
Slin_0326
Mg-chelatase subunit ChlI-like protein (510 aa)
              0.527
Slin_1569
Glycoside hydrolase family protein (1063 aa)
   
          0.524
Slin_2536
Hypothetical protein (741 aa)
   
          0.497
Slin_5035
Hypothetical protein (214 aa)
   
          0.486
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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