STRINGSTRING
Slin_0376 protein (Spirosoma linguale) - STRING interaction network
"Slin_0376" - Major facilitator superfamily protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0376Major facilitator superfamily protein (420 aa)    
Predicted Functional Partners:
Slin_0377
Hypothetical protein (206 aa)
              0.676
Slin_2239
Hypothetical protein (333 aa)
   
          0.568
argH
Argininosuccinate lyase (445 aa)
              0.558
Slin_0378
Hypothetical protein (147 aa)
              0.526
Slin_1225
Hypothetical protein (801 aa)
   
          0.517
Slin_4550
TonB-dependent receptor plug (1192 aa)
   
          0.484
Slin_4954
TonB-dependent receptor plug (1182 aa)
   
          0.474
Slin_3208
TonB-dependent receptor plug (823 aa)
   
          0.436
tatA
Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system (67 aa)
   
          0.428
Slin_5004
Hypothetical protein (1010 aa)
   
          0.417
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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