STRINGSTRING
Slin_0415 protein (Spirosoma linguale) - STRING interaction network
"Slin_0415" - Short-chain dehydrogenase/reductase SDR in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0415Short-chain dehydrogenase/reductase SDR (257 aa)    
Predicted Functional Partners:
Slin_0416
Altronate dehydratase (582 aa)
              0.727
Slin_0311
Hypothetical protein (108 aa)
 
          0.557
Slin_0310
Short-chain dehydrogenase/reductase SDR (261 aa)
 
       
0.537
Slin_0413
5-carboxymethyl-2-hydroxymuconatedelta- isomerase (284 aa)
 
          0.498
Slin_5067
Oxidoreductase domain-containing protein (452 aa)
   
          0.481
Slin_0412
Amidohydrolase 2 (274 aa)
 
          0.480
ade
Adenine deaminase (551 aa)
              0.465
Slin_0417
Hypothetical protein (389 aa)
              0.465
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (9%) [HD]