STRINGSTRING
Slin_0428 protein (Spirosoma linguale) - STRING interaction network
"Slin_0428" - Transglutaminase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0428Transglutaminase (678 aa)    
Predicted Functional Partners:
Slin_0429
Hypothetical protein (636 aa)
 
       
0.915
Slin_1490
Hypothetical protein (348 aa)
   
          0.722
Slin_0430
Hypothetical protein (205 aa)
              0.672
Slin_4962
Hypothetical protein (398 aa)
   
          0.665
Slin_1185
Hypothetical protein (217 aa)
   
          0.649
Slin_4961
Hypothetical protein (257 aa)
   
          0.636
Slin_0328
Hypothetical protein (158 aa)
   
          0.560
Slin_2123
Hypothetical protein (1073 aa)
   
          0.558
Slin_2121
Hypothetical protein (1837 aa)
   
          0.524
Slin_0301
Hypothetical protein (448 aa)
   
          0.515
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (10%) [HD]