STRINGSTRING
Slin_0439 protein (Spirosoma linguale) - STRING interaction network
"Slin_0439" - Xylose isomerase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0439Xylose isomerase (308 aa)    
Predicted Functional Partners:
Slin_3435
Oxidoreductase domain-containing protein (381 aa)
 
   
  0.870
Slin_3436
Oxidoreductase domain-containing protein (378 aa)
 
   
  0.867
Slin_1264
Xylose isomerase (274 aa)
   
   
 
0.840
Slin_0970
Oxidoreductase domain-containing protein (385 aa)
 
   
  0.827
Slin_0735
Xylose isomerase (312 aa)
         
    0.800
Slin_4072
Oxidoreductase domain-containing protein (365 aa)
 
   
  0.778
Slin_4732
Oxidoreductase domain-containing protein (427 aa)
 
   
  0.758
Slin_3204
Oxidoreductase domain-containing protein (478 aa)
 
   
  0.749
Slin_1107
Oxidoreductase domain-containing protein (360 aa)
 
   
  0.731
Slin_4507
Oxidoreductase domain-containing protein (358 aa)
 
   
  0.716
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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