STRINGSTRING
Slin_0473 protein (Spirosoma linguale) - STRING interaction network
"Slin_0473" - caffeoyl-CoA O-methyltransferase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0473caffeoyl-CoA O-methyltransferase (214 aa)    
Predicted Functional Partners:
Slin_0474
Peptidoglycan-binding lysin domain-containing protein (801 aa)
              0.849
Slin_1671
Rhodanese (321 aa)
            0.734
Slin_0475
Hypothetical protein (195 aa)
 
          0.627
dtd
D-tyrosyl-tRNA(Tyr) deacylase; D-aminoacyl-tRNA deacylase with broad substrate specificity. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo (150 aa)
              0.606
Slin_0476
methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding protein (111 aa)
              0.512
Slin_5430
Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5’-end of pre-16S rRNA (142 aa)
 
          0.495
Slin_5127
Phosphoribulokinase/uridine kinase (205 aa)
   
        0.460
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction- alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain (890 aa)
         
  0.428
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (11%) [HD]