STRINGSTRING
Slin_0487 protein (Spirosoma linguale) - STRING interaction network
"Slin_0487" - EmrB/QacA subfamily drug resistance transporter in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0487EmrB/QacA subfamily drug resistance transporter (456 aa)    
Predicted Functional Partners:
Slin_2691
Secretion protein HlyD (369 aa)
   
  0.694
Slin_4410
Secretion protein HlyD (370 aa)
   
  0.688
Slin_0891
Family 2 glycosyl transferase (257 aa)
       
      0.483
Slin_6590
NodT family RND efflux system outer membrane lipoprotein (484 aa)
     
 
  0.463
Slin_5197
NodT family RND efflux system outer membrane lipoprotein (492 aa)
     
 
  0.463
Slin_2949
NodT family RND efflux system outer membrane lipoprotein (476 aa)
     
 
  0.463
Slin_0820
NodT family RND efflux system outer membrane lipoprotein (475 aa)
     
 
  0.463
Slin_1184
ArsR family transcriptional regulator (99 aa)
         
  0.421
Slin_6550
Outer membrane efflux protein (433 aa)
         
  0.410
Slin_5506
Outer membrane efflux protein (451 aa)
         
  0.410
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (8%) [HD]