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rpsT protein (Spirosoma linguale) - STRING interaction network
"rpsT" - 30S ribosomal protein S20 in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsT30S ribosomal protein S20; Binds directly to 16S ribosomal RNA (88 aa)    
Predicted Functional Partners:
Slin_6518
Hypothetical protein (309 aa)
   
          0.758
Slin_4064
Hypothetical protein (180 aa)
   
          0.743
Slin_5251
Hypothetical protein (182 aa)
   
          0.714
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination (230 aa)
 
          0.705
Slin_5189
N-acetylglucosamine kinase-like protein (281 aa)
   
          0.693
Slin_2385
Hypothetical protein (901 aa)
   
          0.690
Slin_2316
Hypothetical protein (179 aa)
 
          0.688
Slin_3922
Hypothetical protein; RNaseP catalyzes the removal of the 5’-leader sequence from pre-tRNA to produce the mature 5’-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5’-leader sequence and broadening the substrate specificity of the ribozyme (126 aa)
   
          0.685
Slin_1306
Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (103 aa)
   
          0.677
Slin_4915
Hypothetical protein (150 aa)
   
          0.672
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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