STRINGSTRING
Slin_0535 protein (Spirosoma linguale) - STRING interaction network
"Slin_0535" - NIPSNAP family containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0535NIPSNAP family containing protein (267 aa)    
Predicted Functional Partners:
Slin_0431
Hypothetical protein (341 aa)
   
          0.735
Slin_5623
Oxidoreductase domain-containing protein (458 aa)
   
          0.732
Slin_0417
Hypothetical protein (389 aa)
   
          0.705
Slin_0966
Hypothetical protein (259 aa)
   
          0.685
Slin_3953
Quinoprotein glucose dehydrogenase (747 aa)
   
          0.664
Slin_2450
PQQ-dependent enzyme-like protein (718 aa)
   
          0.650
Slin_5242
Inositol oxygenase (284 aa)
   
          0.648
Slin_2016
Hypothetical protein (212 aa)
   
          0.648
Slin_1132
PQQ-dependent enzyme-like protein (701 aa)
   
          0.639
Slin_4717
Oxidoreductase domain-containing protein (448 aa)
   
          0.636
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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