STRINGSTRING
Slin_0540 protein (Spirosoma linguale) - STRING interaction network
"Slin_0540" - Fatty acid hydroxylase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0540Fatty acid hydroxylase (288 aa)    
Predicted Functional Partners:
Slin_1294
Fatty acid hydroxylase (298 aa)
   
          0.763
Slin_5066
TonB-dependent receptor plug (1001 aa)
   
          0.614
Slin_4475
TonB-dependent receptor (955 aa)
   
          0.603
Slin_5959
Squalene/phytoene synthase (278 aa)
   
 
  0.565
Slin_0539
Thioesterase superfamily protein (171 aa)
   
        0.555
Slin_2149
Monooxygenase FAD-binding protein (391 aa)
     
 
  0.518
Slin_2116
Monooxygenase FAD-binding protein (384 aa)
     
 
  0.518
Slin_1542
Monooxygenase FAD-binding protein (374 aa)
     
 
  0.518
Slin_1534
4-hydroxybenzoate 3-monooxygenase (405 aa)
     
 
  0.518
Slin_0336
Monooxygenase FAD-binding protein (412 aa)
     
 
  0.518
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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