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Slin_0542 protein (Spirosoma linguale) - STRING interaction network
"Slin_0542" - beta-Ig-H3/fasciclin in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0542beta-Ig-H3/fasciclin (330 aa)    
Predicted Functional Partners:
Slin_6240
Na+/H+ antiporter (537 aa)
     
 
    0.643
Slin_5804
Sodium/hydrogen exchanger (418 aa)
     
 
    0.643
Slin_1844
Sodium/hydrogen exchanger (410 aa)
     
 
    0.643
Slin_0211
Na+/H+ antiporter (533 aa)
     
 
    0.643
Slin_0541
Hypothetical protein (152 aa)
              0.593
Slin_4248
beta-Ig-H3/fasciclin (183 aa)
       
0.581
Slin_0543
DNA polymerase I (1024 aa)
              0.469
Slin_0600
Deoxyribodipyrimidine photo-lyase (561 aa)
 
          0.418
Slin_1399
beta-Ig-H3/fasciclin (192 aa)
       
0.411
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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