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Slin_0600 protein (Spirosoma linguale) - STRING interaction network
"Slin_0600" - Deoxyribodipyrimidine photo-lyase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0600Deoxyribodipyrimidine photo-lyase (561 aa)    
Predicted Functional Partners:
Slin_5347
Hypothetical protein (97 aa)
 
          0.832
Slin_0599
Hypothetical protein (149 aa)
              0.724
Slin_5346
Hypothetical protein (55 aa)
 
          0.666
Slin_6515
Rhodopsin (268 aa)
   
          0.602
Slin_6071
Hypothetical protein (303 aa)
 
   
  0.570
Slin_0847
Hypothetical protein (307 aa)
 
   
  0.561
Slin_1643
Rhodopsin (250 aa)
   
          0.548
Slin_4691
FAD dependent oxidoreductase (323 aa)
 
   
  0.544
Slin_5960
Phytoene desaturase (490 aa)
 
   
  0.537
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine (221 aa)
     
 
  0.521
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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