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Slin_0607 protein (Spirosoma linguale) - STRING interaction network
"Slin_0607" - Glycoside hydrolase family protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0607Glycoside hydrolase family protein (699 aa)    
Predicted Functional Partners:
Slin_0605
alpha-N-acetylgalactosaminidase (482 aa)
 
          0.876
Slin_0606
Hypothetical protein (363 aa)
              0.859
Slin_0604
Oxidoreductase domain-containing protein (327 aa)
              0.557
Slin_0608
Short-chain dehydrogenase/reductase SDR (247 aa)
              0.552
Slin_0602
Hypothetical protein (453 aa)
              0.548
Slin_2796
alpha-L-fucosidase (581 aa)
   
          0.545
Slin_0603
DegT/DnrJ/EryC1/StrS aminotransferase (470 aa)
              0.540
Slin_3356
Chitinase (373 aa)
   
          0.497
Slin_3892
Alpha-1,2-mannosidase (759 aa)
   
          0.482
Slin_0612
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein (320 aa)
              0.471
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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