STRINGSTRING
Slin_0619 protein (Spirosoma linguale) - STRING interaction network
"Slin_0619" - Polymorphic membrane protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0619Polymorphic membrane protein (1216 aa)    
Predicted Functional Partners:
Slin_3437
Major facilitator superfamily protein (416 aa)
   
          0.587
Slin_0620
LuxR family transcriptional regulator (67 aa)
              0.552
Slin_3843
NHL repeat containing protein (282 aa)
   
          0.524
Slin_3966
Glucose/sorbosone dehydrogenase (601 aa)
   
          0.507
Slin_2904
Hypothetical protein (98 aa)
   
          0.501
Slin_3366
Hypothetical protein (284 aa)
   
          0.488
Slin_3580
alpha-L-rhamnosidase (918 aa)
   
          0.487
Slin_0374
Periplasmic ATP/GTP-binding protein (288 aa)
   
          0.478
Slin_1249
alpha-L-rhamnosidase (951 aa)
   
          0.470
Slin_5067
Oxidoreductase domain-containing protein (452 aa)
   
          0.451
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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