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Slin_0644 protein (Spirosoma linguale) - STRING interaction network
"Slin_0644" - OmpA/MotB domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0644OmpA/MotB domain-containing protein (306 aa)    
Predicted Functional Partners:
Slin_5728
OmpA/MotB domain-containing protein (294 aa)
   
 
 
  0.791
Slin_1912
Periplasmic component of the Tol biopolymer transport system-like protein (512 aa)
   
 
  0.746
Slin_4937
Polysaccharide export protein (800 aa)
     
    0.626
Slin_2568
Ligand-binding protein (812 aa)
     
    0.626
Slin_0645
Hypothetical protein (360 aa)
              0.546
Slin_5938
MotA/TolQ/ExbB proton channel (236 aa)
 
     
  0.535
Slin_5087
MotA/TolQ/ExbB proton channel (277 aa)
 
     
  0.525
Slin_0999
Hypothetical protein (402 aa)
   
 
  0.519
Slin_4434
Outer membrane protein assembly complex, YaeT protein (865 aa)
   
 
  0.491
Slin_6495
acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell (265 aa)
   
 
 
  0.471
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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