STRINGSTRING
Slin_0650 protein (Spirosoma linguale) - STRING interaction network
"Slin_0650" - LysR family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0650LysR family transcriptional regulator (313 aa)    
Predicted Functional Partners:
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box)- 5’-TTATC[CA]A[CA]A-3’. DnaA binds to ATP and to acidic phospholipids (469 aa)
     
 
  0.837
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX (353 aa)
   
   
  0.614
katG
Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity (749 aa)
         
  0.613
Slin_4346
Catalase (716 aa)
         
  0.613
Slin_2900
Catalase (550 aa)
         
  0.613
Slin_0646
Alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen (184 aa)
         
  0.613
ahpD
Alkylhydroperoxidase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity (195 aa)
 
          0.545
Slin_5629
Ferritin Dps family protein (168 aa)
 
     
  0.526
Slin_0734
Ferritin Dps family protein (157 aa)
 
     
  0.526
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3’- to 5’- polarity. Unwinds branched duplex DNA (Y-DNA) (702 aa)
   
   
  0.486
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (9%) [HD]