STRINGSTRING
Slin_0742 protein (Spirosoma linguale) - STRING interaction network
"Slin_0742" - LmbE family protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0742LmbE family protein (882 aa)    
Predicted Functional Partners:
Slin_1640
Sodium solute transporter (566 aa)
 
          0.859
Slin_0743
Hypothetical protein (476 aa)
              0.850
Slin_3366
Hypothetical protein (284 aa)
 
          0.781
Slin_1645
Hypothetical protein (300 aa)
 
          0.781
Slin_4465
Hypothetical protein (199 aa)
   
          0.768
Slin_3613
Hypothetical protein (175 aa)
   
          0.762
Slin_1077
Hypothetical protein (176 aa)
   
          0.762
Slin_2860
Hypothetical protein (168 aa)
 
          0.732
Slin_3235
Hypothetical protein (154 aa)
   
          0.719
Slin_0744
TonB-dependent receptor plug (1088 aa)
              0.691
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (9%) [HD]