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Slin_0858 protein (Spirosoma linguale) - STRING interaction network
"Slin_0858" - Radical SAM protein in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0858Radical SAM protein (349 aa)    
Predicted Functional Partners:
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III (339 aa)
       
  0.916
Slin_0857
Hypothetical protein (185 aa)
              0.859
Slin_5348
AsnC family transcriptional regulator (156 aa)
 
 
  0.702
Slin_2901
AsnC family transcriptional regulator (154 aa)
 
 
  0.685
Slin_2721
AsnC family transcriptional regulator (158 aa)
   
 
  0.642
Slin_3277
Beta-lactamase (253 aa)
   
   
  0.515
Slin_1050
Beta-lactamase (255 aa)
   
   
  0.515
Slin_5405
uroporphyrin-III C-methyltransferase (252 aa)
   
   
  0.489
Slin_2052
uroporphyrin-III C-methyltransferase (266 aa)
   
   
  0.489
Slin_5169
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA (1029 aa)
         
  0.486
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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