STRINGSTRING
Slin_0870 protein (Spirosoma linguale) - STRING interaction network
"Slin_0870" - Xylose isomerase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0870Xylose isomerase (280 aa)    
Predicted Functional Partners:
Slin_0735
Xylose isomerase (312 aa)
   
          0.701
Slin_1642
Type 3a cellulose-binding domain-containing protein (658 aa)
   
          0.650
Slin_1717
Hypothetical protein (642 aa)
   
          0.565
Slin_0775
UDP-glucuronosyl/UDP-glucosyltransferase (444 aa)
   
          0.453
Slin_4349
Glycoside hydrolase family protein (1236 aa)
   
          0.446
Slin_0869
RagB/SusD domain-containing protein (503 aa)
              0.440
Slin_0351
Endo-1,4-beta-xylanase (366 aa)
   
          0.429
Slin_4861
XRE family transcriptional regulator (333 aa)
   
          0.422
Slin_0868
TonB-dependent receptor plug (1117 aa)
              0.412
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (10%) [HD]